UMIche
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jsun/umiche
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Installation
Reproducibility
Tmranalysis
Tutorial
UMIche
jsun/umiche
Home
About
Changelog
Contact
Installation
Reproducibility
Tmranalysis
Tutorial
Tutorial
IO
YAML configuration
Tmranalysis
1. preprocessing
1. preprocessing
Barcode extraction
Barcode tagging
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M1. dedup approach
M1. dedup approach
1. UMI graph
2. Unique
3. Cluster
4. Adjacency
5. Directional
6. Markov clustering
7. DBSCAN
8. BIRCH
9. Afinity propagation
homotrimer UMI
homotrimer UMI
1. Splitting UMIs
2. Majority vote
3. Set coverage
M2. pipeline
M2. pipeline
Anchor
Heterogeneity
Standard
M3. count matrix
M3. count matrix
DeepConvCVAE
M4. visualisation
M4. visualisation
Anchor captured read efficiency
Tracing UMI trajectory
UMI dedup multi panel
UMI dedup single panel
UMI dedup trimer
Graph cluster example
Graph cluster true
Homotrimer umi error proba analysis
Inflation expansion
Output
Output
Dedup count
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