Small molecule-miRNA pairs¶
There are 2 small molecule-miRNA (SM-miR) pairs as follows.
| No. | small molecule | mirna |
|---|---|---|
| 1 | 5743 | MIMAT0000539 |
| 2 | 84093 | MIMAT0009203 |
| 2 | 148124 | MIMAT0000098 |
| 2 | 5757 | MIMAT0000066 |
miRNAs¶
Fasta
Protein sequences in the Fasta format are required. The file extension must be .fasta for recognition of the software.
Small molecules¶
Drutai reads the smile strings of small molecules as follows. This needs to be separated by tab.
| No. | small molecule | smile |
|---|---|---|
| 1 | 5743 | CH1...=O)CO)O)C)O)F)C |
| 2 | 84093 | CC1=CN(C(=...].[NH2-].[Pt+2] |
| 2 | 148124 | CC1=C2[C@H...OC(=O)C)O)C)O |
| 2 | 5757 | C[C@]12CC[C@...=C3C=CC(=C4)O |
Example data¶
Users can download our example data this way.
Code
Output
import deepsmirud
deepsmirud.predict.download_data(
url='https://github.com/2003100127/deepsmirud/releases/download/example-data/example_data.zip',
sv_fpn='../../data/deepsmirud/example_data.zip',
) ____ _ _ _ ____
| _ \ ___ ___ _ __ ___ _ __ ___ (_)_ __| | | | _ \
| | | |/ _ \/ _ \ '_ \/ __| '_ ` _ \| | '__| | | | | | |
| |_| | __/ __/ |_) \__ \ | | | | | | | | |_| | |_| |
|____/ \___|\___| .__/|___/_| |_| |_|_|_| \___/|____/
|_|
05/04/2025 12:00:17 logger: =>Downloading starts...
05/04/2025 12:00:18 logger: =>downloaded.