Versions

Change¶

Version	Date
0.1.1
0.1.2

Before 0.1.2¶

The version 0.1.1 of DeepsmirUD was used to infer a small molecule-miRNA regulation type per instance only. This process is simplified as follows.

Small molecule¶

Estradiol (CID: 5757)

C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@@H]2O)CCC4=C3C=CC(=C4)O

Target¶

MIMAT0000066

>MIMAT0000066 (hsa-let-7e-5p)
UGAGGUAGGAGGUUGUAUAGUU

Inference¶

deepsmirud -m LSTMCNN -sm deepsmirud/data/example/5757.txt -mir deepsmirud/data/example/MIMAT0000066.fasta -mf /the/path/you/prefer/model/lstmcnn -o ./out.deepsmirud

Tensorflow¶

Comparison¶

Our experience suggests that changes in Python versions have a smaller impact compared to changes in TensorFlow versions.