Versions

python run_deeptminter.py -n 3jcu -c H -i ./input/ -o ./output/ -r transmembrane

-n --name -> a sequence name. For example, '3jcu'.
-c --chain -> a chain name. For example, 'H'. This can be empty if you prefer a sequnce name like '3jcuH' or '0868'.
-i --input -> input path
-o --output --> prediction results
-r, --region --> region of transmembrane protein. It can take 'transmembrane', 'cytoplasmic', 'extracellular', 'combined', 'all where 'combined' means accumulation of 'transmembrane', 'cytoplasmic', 'extracellular'. 'all' means the whole fasta sequence.