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Installation
Tutorial
- Get started
  - Overview
  - Feature
  - Dataset
- Sequence
  - Read
  - Retrieve
- Edge extraction
  - Unipartite
    
    Concept
    
    Unigraph
    
    Usage
    
    Pipeline
  - Bipartite
    
    Concept
    
    Bigraph
    
    Usage
    
    Pipeline
  - Cumulative
    
    Concept
    
    Usage
    
    Pipeline
- Visualisation
  - Structure
    
    PPI interface
    
    Coloring
    
    Protein-ligand binding pocket
- Feature
- Topology
  - PDBTM
  - Phobius
  - TMHMM
  - Segment
- MSA
- Collation
  - Individual collation
  - Batch collation
- Mutation
  - MutHTP
  - Pred-MutHTP
- Mapping
  - Conversion between PDB and UniProt
- Quality control
  - Preprocessing
    
    Single metric
    
    Integrated metric
  - Post evaluation
    
    Residue contact
    
    Evaluation involving two-site prediction
- Protein-protein interaction
- Cath
  - Fetch data
  - Fetch with customised metrics
Feature
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Versions

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Feature

Feature#

LIPS program
Helix surface
Lipophilicity score
Entropy
Topology

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Protein-ligand binding pocket

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LIPS program

By Jianfeng Sun

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